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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 375 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 465 repositories
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 6 BSD-3-Clause 1 11 8 Updated Feb 10, 2026
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Feb 10, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 10, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 98 34 20 7 Updated Feb 9, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 4 88 4 Updated Feb 9, 2026
  • np_notebooks Public
    AllenInstitute/np_notebooks’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Feb 9, 2026
  • np_workflows Public
    AllenInstitute/np_workflows’s past year of commit activity
    Python 0 3 2 0 Updated Feb 9, 2026
  • spatial_compare Public

    package for comparing spatial transcriptomics datasets

    AllenInstitute/spatial_compare’s past year of commit activity
    Jupyter Notebook 6 8 10 8 Updated Feb 9, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 1 3 0 Updated Feb 9, 2026
  • spots-in-space Public

    spatial transcriptomics analysis

    AllenInstitute/spots-in-space’s past year of commit activity
    Python 2 0 15 3 Updated Feb 9, 2026
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